Title page for ETD etd-10122005-134449


Type of Document Dissertation
Author Clements, Andrew P.
URN etd-10122005-134449
Title Molecular biology and biochemical characterization of the CO dehydrogenase-linked ferredoxin from Methanosarcina thermophila strain TM-1
Degree PhD
Department Anaerobic Microbiology
Advisory Committee
Advisor Name Title
Ferry, James G. Committee Chair
Dean, Dennis R. Committee Member
Johnson, John L. Committee Member
Sitz, Thomas O. Committee Member
White, Robert H. Committee Member
Keywords
  • Methanosarcina thermophila.
  • Agglomeration.
  • Ferredoxin-NADP reductase.
Date of Defense 1992-09-05
Availability unrestricted
Abstract
The CO dehydrogenase~linked ferredoxin from acetate-grown Methanosarcina thermophiIa was characterized to determine the structure and biochemical properties of the iron-sulfur clusters. Chemical and spectroscopic analyses indicated that the ferredoxin contained two [4Fe-4S] clusters per monomer of 6,790 Da, although a [3Fe-4S] species was also detected in the oxidized protein. The midpoint potentials of the [4Fe-4S] and [3Fe~4S] clusters at pH 7 were -407 m V and + 103 m V, respectively. Evidence from biochemical and spectroscopic studies indicated that the [3Fe-4S] species may have been formed from [4Fe-4S] clusters when ferredoxin was oxidized.

The gene encoding the CO dehydrogenase-linked ferredoxin (fdxA) in Ms. thermophila had the coding capacity for a 6,230-Da protein which contained eight cysteines with spacings typical of 2[4Fe-4S] ferredoxins. A second open reading frame (ORF1) was also identified which had the potential to encode a 2[4Fe-4S] bacterial-like ferredoxin (5,850 Da). The deduced proteins from fdxA and ORF1 were 62% identical. fdxA and ORFI were present as single copies in the genome and each was transcribed on a monocistronic mRNA. Both fdxA and ORF1 were transcribed in cells grown on methanol and trimethylamine, but only the fdxA -specific transcript was detected in acetate-grown cells. The apparent transcriptional start sites offdxA and ORFI were downstream of sequences which had high identity with the consensus methanogen promoter.

The heterodisulfide of two cofactors unique to the methanogenic microorganisms, HS-HTP and HS-CoM, was enzymatically reduced in cell extracts of Ms. thermophila using electrons from the oxidation of either H2 or CO. The homodisulfides of either HS-HTP or HS-CoM were not reduced under the same conditions. The results indicated that methane is formed by reductive demethylation of CH3-S-CoM using HS-HTP as a reductant in Ms. thermophila. Coupling of CO oxidation with reduction of the heterodisulfide suggested that the CO dehydrogenase-linked ferredoxin may be involved, although the details of electron flow are not known.

Files
  Filename       Size       Approximate Download Time (Hours:Minutes:Seconds) 
 
 28.8 Modem   56K Modem   ISDN (64 Kb)   ISDN (128 Kb)   Higher-speed Access 
[BTD] LD5655.V856_1992.C628.pdf 8.26 Mb 00:38:15 00:19:40 00:17:12 00:08:36 00:00:44
[BTD] next to an author's name indicates that all files or directories associated with their ETD are accessible from the Virginia Tech campus network only.

Browse All Available ETDs by ( Author | Department )

dla home
etds imagebase journals news ereserve special collections
virgnia tech home contact dla university libraries

If you have questions or technical problems, please Contact DLA.