Title page for ETD etd-12052003-121854


Type of Document Dissertation
Author Calzone, Laurence
Author's Email Address lcalzone@vt.edu
URN etd-12052003-121854
Title Temporal organization of the budding yeast cell cycle: general principles and detailed simulations
Degree PhD
Department Biology
Advisory Committee
Advisor Name Title
Tyson, John J. Committee Chair
Rogers, Robert C. Committee Member
Sible, Jill C. Committee Member
Wheeler, Robert L. Committee Member
Wojcik, Edward J. Committee Member
Keywords
  • Saccharomyces cerevisiae
  • cyclin-dependent kinase
  • cell cycle
Date of Defense 2003-12-02
Availability unrestricted
Abstract
The budding yeast cell cycle has attracted attention from many experimentalists over the years for its simplicity and amenability to genetic manipulation. Moreover, the regulatory components described in budding yeast, Saccharomyces cerevisiae, are conserved in higher eukaryotes. The budding yeast cell cycle is governed by a complex network of chemical reactions controlling the activity of the cyclin-dependent kinases (CDKs), proteins that drive the major events of the cell cycle. The presence of these proteins is required for the transition from G1 to S phase (Start) whereas their absence permits the transition from S/M to G1 phase (Finish). The cell cycle of budding yeast is based on alternation between these two states. To test the accuracy of this theory against experiments, we built a hypothetical molecular mechanism of the budding yeast cell cycle and transcribed it into differential equations. With a proper choice of kinetic parameters, the differential equations reproduce the main events of the cell cycle such as: the synthesis of cyclins (Cln1,2; Cln3; Clb1,2; Clb5,6) by their transcription factors (SBF, Mcm1, MBF); their association with stoichiometric inhibitors (Sic1, Cdc6); their degradation by SCF and adaptors of the APC (Cdc20, Cdh1). The emphasis was put on mechanisms responsible for the release of Cdc14 from the RENT complex, Cdc14 being a major player in exit from mitosis. Simulations of the wild type strain and more than 100 mutants showed phenotypes in accordance with experimental observations. Some mutants defective in the Start and Finish transitions and the different ways to rescue them will be presented.
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